biology – Page 2 – Replicated Typo

Language – An Embarrassing Conundrum for the Evolutionist?

Hello! This is my first post on the blog and whilst I didn’t want it to be an angry rant after I found this youtube video there seemed little could have been done to avoid it.

This is a video by a creationist named “ppsimmons” who writes on the front page of his youtube channel that he “apologizes for not knowing enough to scientifically refute the evidence for creation nor for being clever enough to “scientifically” support the theory of evolution.” And yet he feels to be enough of an authority to make videos refuting evolution using ‘science’.

I know I shouldn’t let this annoy me as much as it obviously has, I know that there will always be creationists out there and I know that these creationists will never listen to anything I have to say. However, in this case, I’ve decided to respond mostly to set straight the interpretation of Robert Berwick’s words used in this video.

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A history of evolution pt.1: Ancient Greece to Lamarck

The limitations of geological periods, imposed by physical science, cannot, of course, disprove the hypothesis of transmutation of species; but it does seem sufficient to disprove the doctrine that transmutation has taken place through ‘descent with modification by natural selection’. — Lord Kelvin (Of Geological Dynamics, 1869).

It might seem odd that I start a post about evolution with a quote claiming natural selection is inadequate to account for the transmutation of species. It is, though, highly relevant to what I’m going to discuss in the post, and strikes at the heart of why it’s fundamental for us to understand the theory of evolution by natural selection. See, in 1869, Lord Kelvin’s position was fairly reasonable, and, as you’d expect for a man of such high scientific standing, the available evidence in physics did seem to conflict with Darwin’s theory. The Sun was one particularly salient point of contention: to get the diversity of species we see on Earth, evolution needs a long time to work (on the order of hundreds of millions, if not billions of years), yet according to 19th-century physics the Sun could only have been burning for 40-million years.

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Some Links #10: Poo lady tweets shit

Gillian McKeith: You are what you tweet. If you thought the subject of my title was some five-year who just discovered various nouns for his excrement, then you’re not far off: Gillian McKeith is back, and like any bad-sequel she’s saying the same shit, just repackaged into an eerily similar set of events. What I particularly loved about this article is McKeith’s denial that she’s actually the McKeith in question. Confused? Head over and read the article. It’s short and fun.

A strong dose of regulation will keep the health food industry regular. Interesting article by Martin Robbins (of Lay Scientist) over at the Guardian. I’m not normally one for regulation: I think it’s often a backwards way of looking at an issue. And I’m definitely against our ridiculous zeal for legislation-only solutions. But I do think in the case of the health food industry regulation and legislation are fantastically effective. To bring it back to the post above: McKeith has literally made millions through the exploitation of a weakly controlled industry. Ultimately, though, I do think we need to also consider the other effective weapon against these erroneous claims: education. After all, those who know, know not to buy.

I Write Like… H.P. Lovecraft, apparently. It probably explains the lack of comments on my posts: people are scared shitless. It’s okay, I’m not a venomous wordsmith, just a former linguistics student searching for a new university to call home. See, not so scary now… Click the link if you fancy wasting a minute or so of your time.

The Price of Altruism. I always remember first learning about the Price equation at university, and the sad story of its progenitor, George Price, who committed suicide in 1975. Over a Gene Expression, Razib Khan has written a fantastic, in-depth review of Oren Harman’s book, The Price of Altruism. There are too many snippets of information to pick out for a summary, but here’s an ironically amusing section:

The “hawk” and “dove” morphs made famous by Richard Dawkins in The Selfish Gene go back to Maynard Smith’s work, but the terms themselves were of Price’s invention according to Harman. If I read Harman’s chronology correctly Price was already a fervent Christian by this time, having left atheism in the same period as he launched his career as an evolutionary biologist, and there is some hint that the term “dove” may have been influenced by his particular religious leanings. This possibility seems all the more amusing in light of Dawkins’ later career as an atheist polemicist.

Matt Ridley: When Ideas Have Sex. Love him for his biology, or loathe him for his economics, you can’t help but nod in agreement with Matt Ridley’s TED talk. I think he over emphasizes this apparent trend of good times to come. He clearly hasn’t read Taleb’s Black Swan (and probably isn’t all too interested given his risk-taking strategies at Northern Rock). But his stuff on trade and cultural evolution is fairly rock solid from my perspective.

Words as alleles: A null-model for language evolution?

For me, recent computational accounts of language evolution provide a compelling rationale that cultural, as opposed to biological, evolution is fundamental in understanding the design features of language. The basis for this rests on the simple notion of language being not only a conveyor of cultural information, but also a socially learned and culturally transmitted system: that is, an individual’s linguistic knowledge is the result of observing the linguistic behaviour of others. Here, this well-attested process of language acquisition, often termed Iterated Learning, emphasises the effects of differential learnability on competing linguistic variants. Sounds, words and grammatical structures are therefore seen to be the products of selection and directed mutation. As you can see from the use of terms such as selection and mutation it’s clear we can draw many parallels between the literature on language evolution and analogous processes in biology. Indeed, Darwin himself noted such similarities in the Descent of Man. However, one aspect evolutionary linguists don’t seem to borrow is that of a null model. Is it possible that the changes we see in languages over time are just the products of processes analogous to genetic drift?

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Mathematical Modelling 101: Introduction & Viability Selection

I think the best place to start would be to state the following: Do not fear math. I spent far too long dodging equations and, when that wasn’t possible, freezing in a state of absolute confusion when faced with something like:

By the end of this post, you’ll hopefully be able to understand the above is not just a bunch of jibberish. Now before we get into the nitty gritty of the subject, I think a clarification of my assumptions is in order:

That you’ll have a basic understanding of evolutionary biology. If not, then may I suggest Evolution as a very good, and highly comprehensive, introductory text. Failing that, you can always pop over to the wikipedia page.
Although these posts will refer to evolutionary biology, my background is in linguistics and socio-cultural evolution — and as such, I will tend to default to the position of explaining these latter areas.
It might sound insulting, but you’ll also need a basic understanding of math. You’ll be surprised by the number of people who, despite being very bright, lack even an elementary grasp of the fundamentals. A good place to start is with Kahn Academy’s wonderful online resource: http://www.khanacademy.org/.
Having said that, I’m not really expecting anything beyond algebra level math, and I’ll do my best to try and clarify any confusions in the comments section. Also, I’m hardly a math guru, so I welcome anyone with a solid background in math to provide any hints, tips or suggestions, and, in the event I’m plain wrong, point out any mistakes.

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Culture and the human genome: a synthesis of genetics and the human sciences

Humans are immersed in culture from birth. It is so fundamental to our experience, and what it means to be human itself, yet we often overlook the consideration that “cultural practices might have transformed the selection pressures acting on humans” (Laland, Odling-Smee & Myles, 2010, pg. 137).

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How Culture Shaped The Human Genome

The study of culture, cultural evolution, gene-culture coevolution and niche construction have all received much more attention over the last decade. So it’s nice to see Nature taking on-board a fascinating review by Kevin Laland, John Odling-Smee and Sean Myles about how culture shaped the human genome: bringing genetics and the human sciences together. It’s really worth reading for anyone interested in the interactions between biology and culture. In particular, I was pleased to see them put forward the notion of culture having accelerated recent evolution, contra Stephen J. Gould’s claim that “there’s been no biological change in humans for 40,000 or 50,000 years”. Here’s the abstract:

Researchers from diverse backgrounds are converging on the view that human evolution has been shaped by gene–culture interactions. Theoretical biologists have used population genetic models to demonstrate that cultural processes can have a profound effect on human evolution, and anthropologists are investigating cultural practices that modify current selection. These findings are supported by recent analyses of human genetic variation, which reveal that hundreds of genes have been subject to recent positive selection, often in response to human activities. Here, we collate these data, highlighting the considerable potential for cross-disciplinary exchange to provide novel insights into how culture has shaped the human genome.

Olfactory communication and mate choice

From the regulation and reproduction in bacteria colonies (Bassler, 2002) to complex smell and taste systems of humans (Van Toller & Dodd, 1988), the ability of sensing chemical stimuli, known as chemosensation, is believed to be the most basic and ubiquitous of senses (Bhutta, 2007). One strain of thought places chemosensation as merely an evolved ability to detect dangerous and volatile substances – such as putrefied food (see Bhutta, 2007). Still, the notion that this ability to detect chemical stimuli, particularly in the domain of smell, serves a purpose in communication is not necessarily a contemporary concept (Wyatt, 2009).

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Language as a complex adaptive system

A prominent idea in linguistics is that humans have an array of specialised organs geared towards the production, reception and comprehension of language. For some features, particularly the physical capacity to produce and receive multiple vocalizations, there is ample evidence for specialisation: a descended larynx (Lieberman, 2003), thoracic breathing (MacLarnon & Hewitt, 1999), and several distinct hearing organs (Hawks, in press). Given that these features are firmly in the domain of biology, it makes intuitive sense to apply the theory of natural selection to solve the problem: humans are specially adapted to the production and reception of multiple vocalizations.

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The economy as an evolutionary system

A developing interest of mine is that of complex adaptive systems. Like language, ant colonies and the immune system, the economy is such an evolutionary system. As Plektix explains in a very interesting article:

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